| AltAnlayze is compatible with diverse input files for use in its automated workflows or à la carte analysis options. Workflows are compatible with input text files (e.g., TPM estimates), raw sequence files (FASTQ), already aligned sequence results (e.g., BAM, BED files) and technology specific input file formats (e.g., 10x Genomics, Affymetrix). Alternatively, simple text files results can be loaded within the AltAnalyze à la carte menus to quickly obtain hierarchical clustering results, protein-gene-metabolite networks, dimensionality reduction plots, data integrated pathways, pathway enrichment results and more. Example inputs and outputs are provided below along with tutorial pages. A list of system-codes can be found here. |
